ERX1149110
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
MEG-01
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

ArrayExpress-CellType
Meg01
ArrayExpress-GrowthCondition
RPMI1640_10% FBS_1% Glutamax_1% sodium pyruvate
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-Phenotype
Normal
ArrayExpress-Species
Homo Sapien
ENA first public
2015-10-13
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3430794
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-10-13T14:08:56Z
INSDC last update
2018-03-09T01:10:48Z
INSDC status
public
Submitter Id
Meg01_BR1_TR1_CTCF-sc-2304907
common name
human
sample description
Meg01 ChIP DNA
sample name
Meg01_BR1_TR1_CTCF-sc-2304907

Sequenced DNA Library

library_name
14050747
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17896296
Reads aligned (%)
98.9
Duplicates removed (%)
12.6
Number of peaks
47993 (qval < 1E-05)

hg19

Number of total reads
17896296
Reads aligned (%)
98.4
Duplicates removed (%)
12.8
Number of peaks
47500 (qval < 1E-05)

Base call quality data from DBCLS SRA